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Basel

Arian Jamasb

Elite
@a-r-j

Principal ML Scientist @Genentech / Tensor Jockey / PhD @ University of Cambridge Prev: MILA, Google X, Relation Therapeutic

graphein. Protein Graph Library

1.2k

ProteinWorkshop. Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

275

CPDB. Cython implementation of PDB -> DataFrame parsing

34

graphtype. Type hinting for networkx Graphs

7

pdb-cli. CLI tools for PDB files

6

npview. CLI tools for quickly inspecting CSV/TSV & NumPy (.npy) array files

3

DrugTranslatoR. R package for translating between drug identifiers using the Chemical Translation Service (CTS)

3

TB-Resources. List of online databases and resources for Mycobacterium Tuberculosis

3

covid. Druggability analysis of SARS-CoV-2

2

optimallm. Optimise python functions with LLMs

2