Jakob Russel

CRISPRCasTyper. CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

DAtest. Compare different differential abundance and expression methods

MicEco. Various functions for analysis of microbial community data

MAGinator. MAGinator - Accurate SNV calling and profiling of MAGs

DOC. Dissimilarity Overlap Curve analysis

CRISPRCas_on_Plasmids. This is the code repository for reproducing analyses in the paper: CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

RCon3D. 3D Analysis of confocal images of microbial biofilms/communities

COEF. Collection Of Esoteric Functions

annotation. Pipeline to run multiple tools to annotate prokaryotic genomes and parse output