Thomas Roder

scoary-2. Calculate assocations between genes and traits

orthofinder-tools. Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots

assembly-curator. Quickly generate consensus assemblies for bacterial genomes

flower-plot. A Python function that makes flower plots.

BinaryFileSearch. Python

kegg-map-wizard. Downloads pathway maps from KEGG, creates Python obejcts, converts them into SVG, allows processing in modern browsers.

fast-fisher. A fast, precise, pure Python implementation of Fisher's exact test

gene-loci-comparison. Create fancy (bokeh) gene locus plots from GenBank files!

ncbi-blast. Simple Python wrapper for NCBI Blast.

orthofinder-coreselector. Automated selection of optimal genome core sets for OrthoFinder v3

mgwas-data-exploration-app. Data exploration app for large phenotypic datasets analyzed using mGWAS, originally developed for Scoary2

Frantic-Rules. Simple website to quickly browse the rules of the Frantic card game: https://rulefactory.ch/frantic/

abri-annotate. Run ABRicate using multiple reference databases and maps the results onto genes

dnaapler-wrapper. Wrapper for "dnaapler all" to only reverse complement linear sequences without rotating them.

DnaFeaturesViewer. :eye: Python library to plot DNA sequence features (e.g. from Genbank files)