Kamil S. Jaron

smudgeplot. Inference of ploidy and heterozygosity structure using whole genome sequencing data

k-mer-approaches-for-biodiversity-genomics. k-mer learning materials

generic_genomics. small scripts, functions or bits of code for parsing genomic data

genomic-features-of-parthenogenetic-animals. A project for gathering and re-analysing all published asexual genomes

GenomeTelescope. R

reproductive_mode_TE_dynamics. TE dynamics in yeasts with respect to reproduction mode.

Sequence-a-genome. Source files of materials for practicals of master class Sequence a genome.

troll_hunters. LaTeX template for the generation of Troll Hunters the card game

TE_guppy. Python

CSKS. Coalescent simulations for k-mer spectra

check_species. Shell

genomescope. Fast genome analysis from unassembled short reads

TrinucleotideRetentionModels. A sequence dependent separation of trinucleotides by ion-interaction reversed-phase liquid chromatography.

kamilsjaron.github.io. HTML

Conjunction. Simulator of secondary CONtact using Fisher's JUNCTION representation of genome admixture.

TEAscus. a simulator of TE dynamics for haploid somatic phase and parametrized reproduction mode