Ryan C. Thompson

ido-completing-read-plus. Fancy completion all over Emacs, not just for buffers and files.

amx. An alternative M-x interface for Emacs.

mac-pseudo-daemon. Emacs daemon mode that plays nice with Mac OS.

with-simulated-input. Test your interactive elisp functions non-interactively!

rganalysis. A script for adding replaygain tags to music files

CD4-csaw. Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

roll. A command-line dice-rolling simulator for RPGs

ido-yes-or-no. Use ido to answer yes or no questions.

screen-sendenv. Modify environment variables in a running screen or tmux session

dotemacs. My Emacs configuration (contents of ~/.emacs.d/)

transfercoder. Transfer and transcode your music at the same time

crm-custom. Alternate completing-read-multiple that uses completing-read

emacs-named-timer. Simplified timer management for Emacs Lisp

mergesam. Automate common sam & bam conversions

git-custom-commands. My extra github commands

download-youtube-subscriptions. Download your subscribed videos from Youtube

ido-complete-space-or-hyphen. Make ido completes like built-in M-x does, useful when use smex or use ido to complete other hyphen separated choises

dotemacs-old. My Emacs Configuration

List-Flatten-Recursive. A perl module for flattening lists of lists of lists of lists of ...

ofxtoolkit. My scripts for munging, merging, and archiving OFX files

Dist-Zilla-Plugin-CopyFilesFromBuild. Copy specific files after building (for SCM inclusion, etc.)

mkplaylist. Generate playlists from special music tags

adjust-parens. Indent and dedent Lisp code, automatically adjust close parens

fastqident. Guess the quality encoding system used by FASTQ sequence files.

rctutils. A collection various utility functions I have written for data analysis in R

copytags. Python

Rprofile. My ~/.Rprofile

Dist-Zilla-Plugin-ReadmeAnyFromPod. Automatically convert POD to a README for Dist::Zilla

memlog. Shell

resume. Scripts to build my resume and supporting files

Pod-Markdown. Convert POD to Markdown

Pod-Weaver-Section-WarrantyDisclaimer. Add a standard DISCLAIMER OF WARRANTY section (for your Perl module)

cd4-histone-paper-code. Public release of most of the data analysis code for Lamere et. al. 2016

Pod-Weaver-Plugin-EnsureUniqueSections. Ensure that POD has no duplicate section headers.

python-script-template. A fill-in-the-blank template for writing Python command-line scripts with easy option parsing

emacs-filelock. Functions for manipulating Emacs file locks programmatically

xls2csv. Extract data from multi-sheet Excel spreadsheets into CSV files

BiocParallel. Bioconductor facilities for parallel evaluation (experimental)

Dist-Zilla-Plugin-CheckVersionIncrement. Perl

intemp. A quarantine for incomplete output files

Thesis. The source files for my thesis

piper. Easily set up shell pipelines in Python

hg38-ref. Workflow to download/generate various mapping indices for the human hg38 genome

splitloci. Split a SAM file into nonoverlapping read groups

emacs-system-specific-settings. Emacs Lisp

dotdzil. Perl

Dist-Zilla-Plugin-ReadmeMarkdownFromPod. Generate a README.mkdn from the POD of your main_module

Term-DNAColor. Add colors to DNA and RNA sequences in terminal output

IPC-Open3-System. Perl module to Provide an open3 function with the same syntax as system

placsupport. Python

Text-CSV-Euclid. Perl module to provide a csv parser with options specified on the command-line

Pod-Weaver-PluginBundle-Author-RTHOMPSON. A bundle that implements RTHOMPSON's preferred Pod::Weaver config

nm-actions. Python

Dist-Zilla-PluginBundle-Author-RTHOMPSON. RTHOMPSON's Dist::Zilla Configuration

Dist-Zilla-Plugin-StaticVersion. Perl