Armando Falcucci

SPHARM_analysis. This compendium presents a unified spherical harmonic framework for analysing lithic core morphology and scar patterning.

spharmlithic. This compendium contains an R package for conducting spherical harmonic analysis using Python and R, as well as other quantitative methods for scar pattern analysis.

PaleoSigns. This repository contains data and code to work on the combinatorics of Upper Paleolithic geometric signs.

Data-and-code-associated-with-Iberia-Neanderthal-ecosystems-productivity_Nature-Ecology-Evolution. This repository contains the directories "code" and "data" to reproduce the models, calculations and figure rendering of the paper: Vidal-Cordasco, M; Ocio, D.; Hickler, T., Marín-Arroyo, A.B. (under review) "Ecosystems productivity affected the spatiotemporal disappearance of Neanderthals in Iberia". The file 1_Main_Script.R includes the functions to estimate the herbivore biomass of each herbivore species according to the bottom-up processes of the food chain regulation driven by the Net Primary Productivity (NPP), the specific herbivore guild composition in each ecosystem, and the allometric relationships between body mass and population density. This script was also used to analyse and compare the estimated NPP between the four biogeographic regions of Iberia during the Marine Isotope Stage (MIS) 3. Therefore, this code generates the main results and figures as found in the paper. The file 2_HB_Validation.R reproduces the validation process of the macroecological model to estimate herbivore abundances (used in the 1_Main_Script.R) against empirical present-day herbivore densities from a broad range of terrestrial ecosystems. The file 3_NB_NPP.R includes the analyses of the association between NPP and herbivore biomass in different ecosystems and computes a predictive model. The file 4_Clim_Validation.R was used to perform pollen-based paleoclimate reconstructions with weighted averaging (WA) regressions. These predictive functions are used to estimate temperature and precipitation from the palynological fossil record. The file 5_Rarefaction.R performs a rarefaction analysis with the local faunal assemblages in each biogeographic region of Iberia during the MIS 3. The file 6_Chronology.R was used to perform optimal linear estimation models and summed probability distribution analyses of archaeological assemblages. As the data and code in this repository are complete, it can be reproduced with only an R environment (tested for R v4.1.0) in RStudio. The necessary package dependencies are documented in each .R file. The content of this repository was made possible thanks to funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (grant agreement No. 818299) for the SUBSILIENCE project (https://www.subsilience.eu/).

SpaceTime-Framework. C++

stone_tool_evolution_article_2024. Research Compendium for: "A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework"

Jean-reproducibility-workshop. Code for reproducibility workshop

Dhofar-Nubian. Compendium for the paper "Lithic miniaturization and technological innovation on the Southern Dispersal Route out of Africa"

Lithics3D. An R package for processing and analyzing 3D scans of archaeological lithics

archeofrag.gui. Shiny application for the archaeofrag package

sslarch.github.io. A repository for the organisation of a Special Interest Group at CAA on R, python, and friends

Riparo-Bombrini. Spatial data from the Riparo Bombrini excavations

PDFR. An R package to extract text from pdf.

shiny_3D_TS. R

PaST_core_standardization. Code for Skill and core standardization: An experiment with Oldowan-like flaking systems

Boxgrove-Exp. Differential effects of knapping skill acquisition on the cultural reproduction of Late Acheulean handaxe morphology: Archaeological and experimental insights (code, data, figure, manuscript).

scar-stratigraphy. Senckenberg-funded experimental project on the 3D analysis of lithic scar stratigraphy

PyMesh. Geometry Processing Library for Python

Morpho. R-package providing a toolset for (3D-based) Geometric Morphometrics

repro-template. JASA reproducibility materials template

designspace_culttax_article_2021. Research compendium for 'Matzig, Hussain, Riede (2021) Design space constraints and the cultural taxonomy of European Final Palaeolithic large tanged points – a comparison of typological, landmark-based and whole-outline geometric morphometric approaches'

dispRity. Measuring disparity with R

packrat. Packrat is a dependency management system for R

EA_MSApoints. PLSQL

FactoMineR. :exclamation: This is a read-only mirror of the CRAN R package repository. FactoMineR — Multivariate Exploratory Data Analysis and Data Mining. Homepage: http://factominer.free.fr Report bugs for this package: https://github.com/husson/FactoMineR/issues

Palaeoanalytics. Repository for the Paleoanalytics project.

TontoBasinPoints. Supplemental files for Geometric Morphometric Analysis of Projectile Points from the Southwest United States

ggplot2-for-publications. This tutorial runs through the basics of ggplot2 and how to make a figure ready for publication.

lattice. Trellis Graphics for R

MetBrewer. Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

1511NAC_Dataset. Research compendium for 'Hussain et al. (2023) A pan-European dataset revealing variability in lithic technology, toolkits, and artefact shapes ~15-11 kya'

cTransmission. An Approximate Bayesian Computation Framework for inferring patterns of cultural transmission from frequency data

ctv-archaeology. CRAN Task View: Archaeological Science

archeoviz. Visualisation, Exploration, and Web Communication of Archaeological Spatial Data

E5. Configurable data entry program for archaeology

LGMtechnology. Research compendium for "Territoriality and the organization of technology during the Last Glacial Maximum in southwestern Europe"

rrrpkg. Use of an R package to facilitate reproducible research

usethis. Set up commonly used 📦 components

Raskin-et-al.-2023. R markdown describing the 3D Elliptical Fourier Analysis technique Raskin et al. (2023) applied for their Society of American Archaeology poster. Also contains citations for that poster. Questions should be directed to lraskin@haverford.edu

Polygonal_Masonry. This repository contains the Quarto project with all data and R code required to fully reproduce analyses and figures for the following article: Fontana G. and S. Bernard (2023), A new method for the energetics analysis of polygonal masonry in Samnite hillforts (Italy).

NetLogo. turtles, patches, and links for kids, teachers, and scientists

ABMA. SantaFeInstitute/ABMA: the code repository and website for Agent-Based Modeling for Archaeology.

post-HP_points. Code and data for Timbrell et al.'s geometric morphometric analysis of post-HP points at Border Cave

Data-projects-with-R-and-GitHub. HTML

pastclim. An R package providing helper functions to interact with timeseries of worldwide climate reconstructions

ganttrify. Create beautiful Gantt charts with ggplot2

useweaR. workflow and analysis for use-wear

R-CV. My CV created in R

automate-cv-rmd. Automate your CV - easy as 1, 2, knit! A workshop to get from data to professional CV using R Markdown presented at R-Ladies Melbourne

caa2022_GitGitHub_workshop. This workshop, organised on behalf of the CAA-SIG "Scientific Scripting Languages in Archaeology", offers an introduction to version control and collaborative coding for archaeologists

quarto-cli. Open-source scientific and technical publishing system built on Pandoc.

awesome-quarto. A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

rrtools. rrtools: Tools for Writing Reproducible Research in R

archeofrag. R package for Refitting and Spatial Analysis in Archaeology

outlineR. An R package to derive outline shapes from (multiple) artefacts on JPEG images.

cv. My CV built using RMarkdown and the pagedown package.

openscience_course. Course: 'Open Science. Guiding principles and best practices'. Eberhard Karls Universität Tübingen, 2021